1–3 FBK KaunasRhyl FC 0–0 Sūduva MariampolFC Levadia Tallinn 2–1 FC HakaSkála Ítróttarfelag 0–1 IK StartLyn Fotball 1–1 FC Flora TallinnIFK Göteborg 0–1 Derry City F.C.
Rewanże 27 lipca 2006 SK Tirana 2–0 NK Varteks VaraždinCSKA Sofia 4–1 Dinamo TiranaLiteks Łowecz 5–0 NK KoperRànger’s FC 0–0 FK SarajevoNK Domžale 5–0 HNK OrašjeFC Dinamo Bukareszt 5–1 Hibernians FCSS Murata 0–4 APOEL FCOmonia Nikozja 2–1 HNK Rijeka Makedonija Gjorcze Petrow Skopje 1–1 Lokomotiw SofiaKSV Roeselare 5–1 Wardar Skopje Sliema Wanderers FC 0–1 Rapid BukaresztFC Vaduz 0–1 Újpesti TE Qarabağ Ağdam 1–2 pd. Zimbru Kiszyniów BSC Young Boys 1–0 Mika Asztarak Kajrat Ałmaty 2–1 Videoton FC FehérvárDynama Mińsk 0–0 Zagłębie Lubin FC Spartak Trnava 0–1 Karvan Yevlax Bananc Erywań 1–2 Ameri Tbilisi Nistru Otaci 0–1 BATE BorysówTobył Kostanaj 0–0 FC Basel 1893WIT Georgia Tbilisi 2–1 FC Artmedia Petržalka Drogheda United F.C. 3–1 pd. HJK Helsinki Knattspyrnufélagið Valur 0–0 Brøndby IF Llanelli AFC 0–0 Gefle IFSkonto FC 3–0 AS La Jeunesse d'Esch FC Etzella Ettelbruck 0–3 Åtvidabergs FF Gøtu Ítróttarfelag 0–2 FK Ventspils SK Brann 1–0 Glentoran FC Íþróttabandalag Akraness 2–1 Randers FC FBK Kaunas 1–0 Portadown F.C. Sūduva Mariampol 2–1 Rhyl FC FC Haka 1–0 FC Levadia TallinnIK Start 3–0 Skála Ítróttarfelag FC Flora Tallinn 0–0 Lyn Fotball Derry City F.C.